rs36411800 SNP Detail

Summary

• ID
  rs36411800
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69835416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGAGGGTG GGGGCTTCCT
  GCTTTCACAC GCTCTGTGGT GTTCACCACA CACCTCACAT TGTTATTTAT TTAGGTAGGT
  GAACACACAG TTGCTACACA GCACTGTGGG GTCAGAGGTC AACCTGGGGG CCTTGATTCT
  CACTCAGTTA GCATTGACTT GGAAGGAGAA ACTCGGGGAG CTACACCTGG AAACACAGTG
  M
  TAATAAAATG TGCTGAGATA CACGTACCTG TGCTGGGAGG TCGGAGAGGA CATTCTCTGA
  GCCAAAGAGA ACAGCCACCG TGCTCCTGGG AACACTAATT TTGGTGGATG GAACACATAA
  GTGTTACTGT GTACCATGGA GGTCAGAGGA CAACTTGGGG GAATCGATTC TCTCCTATCA
  TGTAGGACCA AGGGATCAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51016673	NES14398558	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36411800					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51016673	NES14398558	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69835416 () rs orientation: forward

Symbol	Name	Function Class
4930512B01Rik	RIKEN cDNA 4930512B01 gene	1702 bp upstream
Cdkl1	cyclin dependent kinase like 1	within coordinates
Cpgi4702	CpG island 4702	1830 bp proximal
Rr265514	regulatory region 265514	384 bp proximal
Tssr116527	transcription start site region 116527	1613 bp downstream
Tssr116528	transcription start site region 116528	1632 bp downstream
Tssr116529	transcription start site region 116529	1639 bp downstream
Tssr116530	transcription start site region 116530	1963 bp downstream