rs36413263 SNP Detail

Summary

• ID
  rs36413263
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:45282050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGACAG CTGCTTCTAA
  GCCATGCTGG CTGATCTGTG GCACTTTGGA GGAATGTTTT AGCACTGCTG TGAATATGGC
  ATGCAGTTTG CCACAGGCAC TCAGGAGGCT TTGCTTAAAT TAATCAGGTG TAGGTAATCT
  TATCTGAAAT TGCATCTGTA TTACCTGACT GAAGATTTAA AGGGTTGGGA TCTGCTAGCT
  W
  TGAAAAAAAG AATCACTAAG GGGCTGGTAG GCAATTAAAT GCTCAGTTTT GTATAATATT
  ATTGCACAAG TGAAGGATAC ACAGAGAGTA CTATAGGAGC TAGAACTTCG CTAGCAATTT
  GATTAGATTG TAGAGAATCG TAACCTTTAT TGCTCAGTTG AGAGTACAAC GTTGAATTCT
  ACATTTTAAT GAGCGTTGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51300997	NES13767460	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36413263					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51300997	NES13767460	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:45282050 () rs orientation: forward

Symbol	Name	Function Class
6330419E04Rik	RIKEN cDNA 6330419E04 gene	1008 bp upstream
Cntnap2	contactin associated protein-like 2	within coordinates