rs36413855 SNP Detail

Summary

• ID
  rs36413855
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:66686468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGGTCCAC AGGCAGTGGT GGTTGGGGAC AAGGTATACG
  TGGGGATCAT TGAGTTGTTA CTTTAGGGGT CAGATAGCTT CACAACAAGC CAGAGTAAGA
  R
  GTTCACATAG AAGAAACTAC TGTTGTGACC ATGGAAGTCC GAGGAACATC AATGGCAGAG
  GGAGACAAAT AATGACTAGA ATCCCAGTCC TGAACTCAGA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51709113	NES14574118	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36413855					SNP	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51709113	NES14574118	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:66686468 () rs orientation: forward

Symbol	Name	Function Class
Rr369944	regulatory region 369944	378 bp downstream
Rr503570	regulatory region 503570	1536 bp distal
Rr503571	regulatory region 503571	within coordinates
Rr503572	regulatory region 503572	468 bp distal
Rr503573	regulatory region 503573	319 bp proximal
Rr503574	regulatory region 503574	1377 bp proximal
Sla	src-like adaptor	within coordinates
Tg	thyroglobulin	within coordinates
Tssr134588	transcription start site region 134588	1970 bp upstream
Tssr134589	transcription start site region 134589	1939 bp upstream
Tssr134590	transcription start site region 134590	1909 bp upstream
Tssr134591	transcription start site region 134591	1887 bp upstream
Tssr134592	transcription start site region 134592	1393 bp upstream