rs36414401 SNP Detail

Summary

• ID
  rs36414401
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:114337766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAAGAAC AAATCAAAAC
  AAAAAGCAAT ACACACGTCA CCGGTCACTG TAGACGGGCT ACACCGCCGT GACGGGAGAT
  TCTGCTGGGC ACAGACAGCT TCAAATACAA TCATGAAGTC AGAGACTCTC ATTCCCTTCA
  AATACCTCAT GCTTCCCACT AGACCTGTAG AGTTCCCACT AAAAGGGCAC GCCTACAGAC
  R
  CTCCTAACAG ATAAAACGGC TTTCTCTTGA AGAGAAGAGA GACCTAAAGG CCTTTAATGG
  TGGAAGGTTC TCCATCCGGT CAGAGAAGCA GCTCCTACCG CTGTCTGCGG AACAGGATTT
  GTGGCAGGGA AAGCCAGACT GGCTGAGAAC TACTTGGGTG AACGACGACA CTGACCAGAC
  AGCTCTTATT CAAGGTCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52042485	NES15055427	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36414401					SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52042485	NES15055427	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:114337766 () rs orientation: forward

Symbol	Name	Function Class
Rr198888	regulatory region 198888	1235 bp proximal
Rr207539	regulatory region 207539	835 bp proximal
Rr368881	regulatory region 368881	1280 bp upstream