rs36414626 SNP Detail

Summary

• ID
  rs36414626
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:49998639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGATGCCC TGACCCAGAG
  GGGAAGGCAC CACTGATTTG CTTTGGGGTT TGGTCTGTTG TGCTTGGTAG CAGGCTTACC
  TCTCTCACCC TCTGGCCCCA GGCCTTTTTG GCATATTGGG ATATTCTGAA GGGGGTAACC
  AAATCATGTT CCCAGCTGTA TGGCATGAAT GCTGCCAATG TCACTGTCCA GCCACTGCAT
  K
  ACATCATACT TTTCAACCCC GACCATGTGG CGAGTCCCAT TTGGTCCCAC ATGGGAAACA
  AGGCAGAGGC ACAGATCGTC TTGCTTGTGT GCTCAGAGCA GGTTTAGGTG TGGGTGTTCA
  CTGGGGCAGA TCTCCGCTCC TACTTCAGAG TATTTGAAGC CAGGGCCGGG AAGGTGGTAG
  ATTTTGTTGA CCTCTTGGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51109309	NES14348604	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs36414626					SNP	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51109309	NES14348604	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:49998639 () rs orientation: forward

Symbol	Name	Function Class
Rr286159	regulatory region 286159	469 bp proximal
Rr286160	regulatory region 286160	1509 bp proximal