rs36414985 SNP Detail

Summary

• ID
  rs36414985
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5653040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCCCAATAA ATGAGATCTT CACAATGCCT GAGTCTGTGG
  GCACCTTAGC ACCCTGAAGC TGCCATTACA TGGCACCCAG TTTGGTAAGA ACTCCTGATA
  S
  CTCTGCCTAT ATAAACAATT TATTTCTGGG GGCAAGAGGG GCCAGAACTT TGCAACCAGC
  GCCCACCCCA CCCTCCAGCT CCTCCTTTAT AAAAGAAATT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50578372	NES13651107	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	G	G	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36414985					SNP	C	G	C	G	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50578372	NES13651107	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5653040 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10461	CpG island 10461	398 bp distal
Kat5	K(lysine) acetyltransferase 5	2 bp downstream
Rnaseh2c	ribonuclease H2, subunit C	53 bp downstream
Rr363585	regulatory region 363585	within coordinates
Rr370434	regulatory region 370434	1053 bp downstream
Tssr154457	transcription start site region 154457	1160 bp downstream
Tssr154458	transcription start site region 154458	1096 bp downstream