rs36415273 SNP Detail

Summary

• ID
  rs36415273
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114270819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGAGGTT ATTTCTGCTC
  ACAAGATGTG TTGGGAAAAT TGTGGCCCCC ATATACTAAT AATCTCAGCA CCTGAAGGTT
  GGAGCCCAGC CTGGGCCACT TGAGACCCTG ATTCAATAAT ACAGAAGTCA AAAACAAGGG
  CGGTTGTATT TTGCACAGAC TAGAAGGGAT GGCCTGCAGG TACTAGATTC AGGTTGCCTA
  Y
  CTAGCTTGTG TCACTTCCCT GCATGAACGA CCATCCAACC GAGTGGCTCA TTCTGACCCA
  CGGGTGACTT GAGTCCCTTG GTTAGCTCTG TCTTCCTTGT CATGGCTTCT TTGTCTTCCT
  CATCCAGTCT TTCTCAGAGC TGGTAAAGAG ATAAAGAGAA TGAGTAGGTC TCTCACAAGC
  TGAATAGTCA GCTTTCAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51798672	NES14715482	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36415273					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51798672	NES14715482	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114270819 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16310	CpG island 16310	904 bp distal
Gm73235	predicted gene, 73235	within coordinates
Rr617830	regulatory region 617830	1822 bp distal
Rr617831	regulatory region 617831	755 bp distal
Rr617832	regulatory region 617832	1315 bp proximal
Rr617833	regulatory region 617833	1818 bp proximal
Tssr48058	transcription start site region 48058	1580 bp downstream
Tssr48059	transcription start site region 48059	1538 bp downstream
Tssr48060	transcription start site region 48060	529 bp downstream
Tssr52696	transcription start site region 52696	1161 bp upstream
Ung	uracil DNA glycosylase	within coordinates