rs36415627 SNP Detail

Summary

• ID
  rs36415627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:42270110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGGGTAT CAAACATGTT
  ATCTTTACTC ACTGTTACAA ACCTAGAGCC CTACCCAGGC CCTGTTGCAG AACAGGGGCT
  CAGCCAATAG CTGTTGAATG AATGAACGCC ACGGAAAGCC TTCTTACCCT GAGTTTGCTC
  TCAGCAGTTA GGGAGCCTTG AACTTCTTTC TTTGACTCCC CTGACATTCC CACCAGATAG
  R
  ATGAAATGGC ACTGCCAGAC CCCGTGGCCT GAAACTCAAC CGGGGGTGGG GGGGGGGGAG
  GGATCAGGCA TCCTCTGGAG TTGGCCGTCA CACTTGGTGT CCTTGGCAGG CTGTCTCGCT
  GGTTTTTATT TTTATTTTTT CCTACTCCCA TTTCTCATGC TGACATGTGT GGCCAGTCAA
  TGGAGCTCGC TATCTTGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50818797	NES13546171	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36415627					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50818797	NES13546171	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:42270110 () rs orientation: forward

Symbol	Name	Function Class
Crtac1	cartilage acidic protein 1	1364 bp downstream
Gm34347	predicted gene, 34347	within coordinates
Mir3085	microRNA 3085	1501 bp upstream