rs36415648 SNP Detail

Summary

• ID
  rs36415648
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:25188340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACAGACTGA CCCAGGGCTC TGATGGCTGC TTGACCCTGC
  TGTCCCTTAC AGCACCTGTG GGCCAGCTGC TTAGAACCTG TGGACTGGGA AGCTTGCAGG
  Y
  CCTTGGTGAT TGGGGTTGGT CCTTGCCCGA TGGTGCCTGT GAGTTGCACA TCTTCCTTCC
  TGGGAACTGT CCTGGGCTCC TTTTCTCTAA GGACCTTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51082774	NES13879820	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C		T	T		C
ss321497022	CHEV_5_24489160	CHEVERUD	SCREENING_POP	f	SNP							T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36415648					SNP	C	C	C	C	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51082774	NES13879820	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:25188340 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6			within coordinates
Prkag2	protein kinase, AMP-activated, gamma 2 non-catalytic subunit			Intron
				Noncoding-Transcript-Variant
Rr608456	regulatory region 608456			378 bp distal
Rr608457	regulatory region 608457			100 bp proximal
Rr608458	regulatory region 608458			254 bp proximal
Rr608459	regulatory region 608459			391 bp proximal
Rr608460	regulatory region 608460			1976 bp proximal