rs36416386 SNP Detail

Summary

• ID
  rs36416386
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:52524138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAGAGAC TCTGTCTCCA
  TACATAAGGT AGAGGGCAAC TGAAGAAGAT GTCTGATGTT AATCTTGGGC TCCTACACAG
  ACACACACAC ACACACACAC ACACACACAC ACACACACAC TGATGCACAC TCCACACTAA
  GCCAATCTCC TGGACTCTCC CAATGCCAGA CCTGAGCTTC CAGACGTCCC CATCACTGCT
  Y
  ACATACTAGC CCACTTCCTC TTGGGCCTGG TACCCACAAG CACTCACACA TTCTTCTCTT
  TGGGGCACCT TGGTGTTTGG CAACTGTGTC TCTCTCCTTC CTGCCGCTGC TACCACACCC
  ATGCCCTTCT CTGCCAACTC CACTGAGTAA TAGTTTTCAT GGTTTTTGCT TTGGCTCCCT
  GCAATGCCCC CCTAACTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51118278	NES13854240	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36416386					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51118278	NES13854240	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:52524138 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15854	CpG island 15854	1308 bp proximal
D5Dcr65	DNA Segment, Chr 5, Derry C. Roopenian 65	54 bp distal
Sod3	superoxide dismutase 3, extracellular	Intron
Tssr46171	transcription start site region 46171	1656 bp upstream
Tssr46172	transcription start site region 46172	1675 bp upstream
Tssr46173	transcription start site region 46173	1753 bp upstream
Tssr46174	transcription start site region 46174	1953 bp upstream
Tssr46175	transcription start site region 46175	1981 bp upstream
Tssr46176	transcription start site region 46176	1995 bp upstream