rs36417343 SNP Detail

Summary

• ID
  rs36417343
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70407048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGTTATA ATAGGCAAAC
  ATGAACAGAC CAATGAGGCA GCTCATGCAG AGGGCCACTT GCTGGCAAGG GAACACTGCA
  TAGCAGGAGA GCACAGCAGC TCTCTCCGAG TGGGAACTGA GGTAGCGCTG CACCTGAGCC
  TGATTCGCTC CATACAAGGA GAGCATCATG AAGACACCTC CAAAGGCCAA AGGCCAGAAA
  K
  TATGACACAC AAAGGGGTCA GGATCCAGGT TAATCCCAGA GATGAGGCCA TGCTGGGAAG
  TCACATTCCA TACATGGCCC AAGCCACCCA CTCTGGCTGC TCCTACAATG ATCACTACCA
  GCTGCCCGAG GAACATGACT AGTGTTTGGA ACACATCTGT CCAGATGACA GCCTTTAGCC
  CACCCAGTGC AGTGTAGATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
ss51678198	NES14821844	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
rs36417343					SNP	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51678198	NES14821844	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70407048 () rs orientation: forward

Symbol	Name	Function Class
Gm6157	predicted gene 6157	within coordinates
Igk	immunoglobulin kappa chain complex	within coordinates
Tssr61316	transcription start site region 61316	83 bp upstream