rs36417513 SNP Detail

Summary

• ID
  rs36417513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:97874208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCAAGGAC TGGCTACTTA GCACCCCCAA ACTAAGCAGC
  CACAAGGTAG GGACGACACT GGGTGGCTTG CTAGAACTTC TCTCCATTTG CCCAAGCCCT
  Y
  TCCTCTTCAA TTGTCCCCTT GATGGTAGAG CCCTCCTCTA CTTGTCTTCC TCCTTCCCAC
  AGAGGGCTTC CTGCCTGGGA TAGCCTCTCC TCTCCTATGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51763557	NES14551332	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36417513					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51763557	NES14551332	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97874208 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col2a1	collagen, type II, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr509000	regulatory region 509000			484 bp proximal
Tssr4707	transcription start site region 4707			561 bp downstream
Tssr132910	transcription start site region 132910			697 bp downstream
Tssr136189	transcription start site region 136189			640 bp upstream
Tssr136190	transcription start site region 136190			610 bp upstream
Tssr136191	transcription start site region 136191			406 bp upstream
Tssr136192	transcription start site region 136192			276 bp upstream
Tssr136193	transcription start site region 136193			259 bp upstream
Tssr136194	transcription start site region 136194			208 bp upstream
Tssr136195	transcription start site region 136195			185 bp upstream
Tssr136196	transcription start site region 136196			173 bp upstream
Tssr136197	transcription start site region 136197			155 bp upstream
Tssr136198	transcription start site region 136198			351 bp downstream
Tssr136199	transcription start site region 136199			397 bp downstream
Tssr136200	transcription start site region 136200			415 bp downstream
Tssr136201	transcription start site region 136201			471 bp downstream
Tssr136202	transcription start site region 136202			525 bp downstream
Tssr136203	transcription start site region 136203			950 bp downstream
Tssr136204	transcription start site region 136204			1043 bp downstream
Tssr136205	transcription start site region 136205			1506 bp downstream
Tssr136206	transcription start site region 136206			1545 bp downstream
Tssr136207	transcription start site region 136207			1575 bp downstream