rs36417716 SNP Detail

Summary

• ID
  rs36417716
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70701741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTATGAC TGCTTGCCAT
  GTAGATACCA TGGCTTGCTG AATAATCAGA AGAGGTGTGA CTCTTATTCT AAAATTTGTC
  ACAAAATGTC AAAATGAGAG ACTCTGTAGG AACGAGTCCT TGACAGACAG CTCAAGGGGT
  TTTTTTCCTT TGTCTCATTT CTACATGAAA GTAAATTTGA AATGATCTTT TTTATTATAA
  K
  AGTAGAAATA CAGTTGGGTT TGAACTATAT GTTTTAATGG CCACGGTTTT GTAAGACATT
  TGGTCCTTTG TTTTCCCAGT TATTACTCGA TTGTAATTTT ATATCGCCAG CAATGGACTG
  AAACGGTCCG CAACCTCTTC TTTACAACTG GGTGACCTCG CGGCTGTGCC AGCCATTTGG
  CGTTCACCCT GCCGCTAAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51676695	NES14820429	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G		T	T	G	T		G
ss321815783	CHEV_6_70674751	CHEVERUD	SCREENING_POP	f	SNP								T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36417716					SNP	G	G	G	G	G	G	G	T	T	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676695	NES14820429	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70701741 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	1689 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	1678 bp upstream
Igkj2	immunoglobulin kappa joining 2	1803 bp downstream
Igkj3	immunoglobulin kappa joining 3	1497 bp downstream
Igkj4	immunoglobulin kappa joining 4	1172 bp downstream
Igkj5	immunoglobulin kappa joining 5	834 bp downstream
Rr158	regulatory region 158	1194 bp proximal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	378 bp upstream
Rr399685	regulatory region 399685	790 bp upstream
Rr399686	regulatory region 399686	1754 bp upstream
Tssr56952	transcription start site region 56952	1906 bp downstream
Tssr56953	transcription start site region 56953	1210 bp downstream
Tssr56954	transcription start site region 56954	1078 bp downstream
Tssr56955	transcription start site region 56955	857 bp downstream
Tssr56956	transcription start site region 56956	1051 bp upstream
Tssr56957	transcription start site region 56957	1673 bp upstream
Tssr56958	transcription start site region 56958	1720 bp upstream
Tssr56959	transcription start site region 56959	1738 bp upstream
Tssr56960	transcription start site region 56960	1761 bp upstream
Tssr56961	transcription start site region 56961	1775 bp upstream
Tssr56962	transcription start site region 56962	1783 bp upstream
Tssr56963	transcription start site region 56963	1832 bp upstream
Tssr56964	transcription start site region 56964	1847 bp upstream
Tssr56965	transcription start site region 56965	1853 bp upstream
Tssr56966	transcription start site region 56966	1864 bp upstream
Tssr56967	transcription start site region 56967	1879 bp upstream
Tssr56968	transcription start site region 56968	1903 bp upstream
Tssr56969	transcription start site region 56969	1939 bp upstream
Tssr56970	transcription start site region 56970	1952 bp upstream
Tssr56971	transcription start site region 56971	1972 bp upstream
Tssr56972	transcription start site region 56972	1998 bp upstream
Tssr61321	transcription start site region 61321	1725 bp downstream
Tssr61322	transcription start site region 61322	1890 bp downstream
Tssr61323	transcription start site region 61323	1905 bp downstream
Tssr61324	transcription start site region 61324	1995 bp downstream