rs36417830 SNP Detail

Summary

• ID
  rs36417830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44890641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGAAGGA GGGAGGGAGG
  GGGGAGTCGC GAGGTCAAGG TCACCGTGCC CCCTCTCCGT CAGAACCCGG AAAACTGCCT
  CCTCGCTCCT CGGCTGCGCC TGCCTGAGGC CAGGCCTGAG AGTCAACCTC CCGCAACTCT
  TGACGGCTGC TCTATTGGGA AGGCGCCTAA GAGGCGGCAA CCCGACCCGG CTTCATTTCC
  Y
  GCCCGCTAGG GACAGCCACC TCCTGTTCGG AGGACTCAGG ACACCAGCTT GCTTTCCCTT
  CTGAGGCCAT AGTTCCAGGG AAGGAGGTAA AGTGAGCACA GGGGGCGTTT CCGAGGAGGC
  TCCTAGGGAC CTGTGACAGC CACGGGCTCA GTCCTGGGGT CGGAGGGTTC AGGAGTGGCT
  GGGGCTGGAG CTCAGTTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51480351	NES13971404	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C	C	C	C	T	T	C
ss149131942	ENSMUSSNP5528411	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36417830					SNP	C	T	C	C	C	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51480351	NES13971404	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44890641 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19038	CpG island 19038	within coordinates
Rr380753	regulatory region 380753	within coordinates
Slc6a16	solute carrier family 6, member 16	within coordinates
Tssr66503	transcription start site region 66503	111 bp downstream
Tssr66504	transcription start site region 66504	103 bp downstream
Tssr72356	transcription start site region 72356	1930 bp upstream
Tssr72357	transcription start site region 72357	1922 bp upstream
Tssr72358	transcription start site region 72358	1897 bp upstream
Tssr72359	transcription start site region 72359	1867 bp upstream
Tssr72360	transcription start site region 72360	1830 bp upstream
Tssr72361	transcription start site region 72361	1807 bp upstream