rs36417858 SNP Detail

Summary

• ID
  rs36417858
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129051259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTTGGTT TCTGTGGGCA
  TCCAAGTAGA CACTAAAGAA ATTCTTACTT TTTTTTTTCC TTATTGCCTC TGTATTTCAA
  AGAAGTTTAG TATATACACC CGGAAAGCCT GTGTCCTCTA TTGCTAAATG TTCATTTTGC
  TATTAGAAAG AATCTCTCTT GCATAAAAGG CAGAGTTCAT GACCAAAATG CCCTATGTCT
  R
  TAACATTTCT TACAAACCAT TAAGGTGGGT TAAATGGCTG TTTTCATCCC TCTGTCCCCT
  TTAATAATAT AAGGGATATT GAGAAAGGTT GGGGTTTTTC CCCCCGAAAA GGCATGATAT
  AATTATATCT CAAATAAGCA AACACCAGAT GACACAAGGT GAAGATTTAT GAAGAGTTTC
  AGTAGCTGAT AAAGACTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51624491	NES14657232	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36417858					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51624491	NES14657232	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129051259 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13813	CpG island 13813	913 bp distal
Gm65501	predicted gene, 65501	within coordinates
Rr584978	regulatory region 584978	463 bp distal
Rr584979	regulatory region 584979	552 bp distal
Rr584980	regulatory region 584980	1056 bp proximal
Rr584981	regulatory region 584981	1116 bp proximal