rs36418215 SNP Detail

Summary

• ID
  rs36418215
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109685791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCTGCAG GTGTCTTTAC
  CAAGATATGT CAGTTGGTGA GTGTCACATA ACACTATGAC TCTAGAAAAG CCTGGGCCCC
  AGATCAGCTC TTTACCAGCA TCCTGCCATG TCTACGGGCT GTGCTCTTTG ATGCCATTAG
  CAAGGCCTTG AGGACTGGTG GGTGCTGGCT ACGATTGGGA CCAGGGAACA GCAAGCTGTC
  M
  TCAGCCACTG CTGCCTGTCT CTTATCTCTG ATACTGGTAC CCCTGCCCTC TGGAGTGGTA
  GATGTAAGGC GGCACTTCAG ACCCCTTTTC CCTAGTGAAC TTCTCTTTAT GGCTAACATT
  CTCTGGTAGC CTCCTCATGG CATCAAAATT GCCTTTGAGT GTGGTTGTTT GAGCAGGGCC
  CTTTGGTGGC TCTCTTGTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51052961	NES14374724	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36418215					SNP	A	A	A	A	A	C	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052961	NES14374724	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109685791 () rs orientation: forward

Symbol	Name	Function Class
Gm59461	predicted gene, 59461	286 bp downstream
Gm60279	predicted gene, 60279	740 bp downstream
Mir495	microRNA 495	541 bp downstream
Mir667	microRNA 667	649 bp upstream
Mirc6	microRNA cluster 6, including Mir379 through Mir544	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Tssr115176	transcription start site region 115176	535 bp downstream