rs36419219 SNP Detail

Summary

• ID
  rs36419219
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127543802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACCCCCA ACCCTGCCCT
  TATCACCAGA GACCCTCTTT CTCTCAAGCC GCCTCACCAT GTCTACTCCC TACATTTCCC
  ACCCAGAGCC TTATGGCTCA GGGTTGAGAA CTAGTCCCCT AGTGGCTCTG CTCTCTTCTT
  TGCTGGTTCA AGGTCAGAGA TCGCCTTCCT TGTGTCCTTG CCGCCCTTGG CCCTATGCCC
  W
  GTCTGCTTCC TCTCTCTCCA AGCTAATATC AGGCCTGGGA CATTCATTCC CAGCTACCTT
  CCTTCCTCCT TCTGTTGACA GTTACAGAAA AGCGGGCAGG ATAGGTGAGC GTTTGAGAAC
  TTCTAAGATC TTCAGCGACA GTGCCTGGGT TTATACGCCT ACCTCACCTA GGGTCTTCCC
  TGGTTTTCTT TTTTTATTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50947113	NES14150410	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36419219					SNP	A	A	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50947113	NES14150410	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127543802 () rs orientation: forward

Symbol	Name	Function Class
Myo1a	myosin IA	within coordinates
Rr213604	regulatory region 213604	2 bp distal
Rr221966	regulatory region 221966	1045 bp distal
Rr226492	regulatory region 226492	within coordinates
Tssr96246	transcription start site region 96246	1127 bp downstream
Tssr96247	transcription start site region 96247	1094 bp downstream