rs36419400 SNP Detail

Summary

• ID
  rs36419400
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:97467227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAACCCCG ACCCTGAAGT
  TTTGCCCTAC AAAGGTGGCT TAGGAAACCA GCCCAGCGCT GATCTCTTGA GCCCCACCCT
  AGGGAAAGAC AGCTGCCAGC TCCCATGGAC ACAAATAAAG CTTGACTTGA TTTGGCCATA
  ATTTGGGTTG GTGGTCTTTC TCCTTACATC TGTGGGATTA ACAGAGCTAT TTATTTTTTC
  M
  GCAGCACACA TTAGCTGGCA TGCTAACTGG AGCTCTGTGC CGTTTACATA CATGTAGATA
  GGGTGCACTG ATCAAATTCA GCTGCATATA CCCTCATGTC TGTAATCATT ATTCCACTTT
  TAGGATGGTA TTCTGTAGCT TCTGCCCCTG ACAGAGAATA ATGCACTTAC CTTCTTGTAT
  ACTGTTTATT AAGTAAACCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss50997904	NES13922350	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs36419400					SNP	A	A	A	A	A	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50997904	NES13922350	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97467227 () rs orientation: forward

Symbol	Name	Function Class
Chd1l	chromodomain helicase DNA binding protein 1-like	831 bp downstream
Gm40102	predicted gene, 40102	within coordinates