rs36419429 SNP Detail

Summary

• ID
  rs36419429
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70704566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCC ACTCTTAGGT GCTTATCTCT
  D
  TACACCAGAA ACCTTAAGAA GCAAC                                      
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51676623	NES14820460	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	A		G	A	G	G		G
ss321815814	CHEV_6_70677576	CHEVERUD	SCREENING_POP	f	SNP										T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36419429					SNP	G	G	A	G	G	G	G	G	A	T	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676623	NES14820460	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70704566 () rs orientation: forward

Symbol	Name	Function Class
Gm30211	predicted gene, 30211	1631 bp upstream
Gm68839	predicted gene, 68839	616 bp upstream
Igk	immunoglobulin kappa chain complex	828 bp downstream
Igkc	immunoglobulin kappa constant	828 bp downstream
Rr158	regulatory region 158	1631 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399685	regulatory region 399685	1735 bp downstream
Rr399686	regulatory region 399686	771 bp downstream
Tssr1880	transcription start site region 1880	731 bp downstream
Tssr56956	transcription start site region 56956	1749 bp downstream
Tssr56957	transcription start site region 56957	1110 bp downstream
Tssr56958	transcription start site region 56958	1094 bp downstream
Tssr56959	transcription start site region 56959	1076 bp downstream
Tssr56960	transcription start site region 56960	1061 bp downstream
Tssr56961	transcription start site region 56961	1045 bp downstream
Tssr56962	transcription start site region 56962	1033 bp downstream
Tssr56963	transcription start site region 56963	986 bp downstream
Tssr56964	transcription start site region 56964	975 bp downstream
Tssr56965	transcription start site region 56965	963 bp downstream
Tssr56966	transcription start site region 56966	955 bp downstream
Tssr56967	transcription start site region 56967	935 bp downstream
Tssr56968	transcription start site region 56968	905 bp downstream
Tssr56969	transcription start site region 56969	881 bp downstream
Tssr56970	transcription start site region 56970	862 bp downstream
Tssr56971	transcription start site region 56971	850 bp downstream
Tssr56972	transcription start site region 56972	791 bp downstream
Tssr56973	transcription start site region 56973	780 bp downstream
Tssr56974	transcription start site region 56974	750 bp downstream
Tssr56975	transcription start site region 56975	713 bp downstream
Tssr61321	transcription start site region 61321	1073 bp upstream
Tssr61322	transcription start site region 61322	925 bp upstream
Tssr61323	transcription start site region 61323	844 bp upstream
Tssr61324	transcription start site region 61324	767 bp upstream
Tssr61325	transcription start site region 61325	734 bp upstream
Tssr61326	transcription start site region 61326	721 bp upstream
Tssr61327	transcription start site region 61327	695 bp upstream
Tssr61328	transcription start site region 61328	617 bp upstream