rs36419489 SNP Detail

Summary

• ID
  rs36419489
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:126166851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGAGGAG GGGGAGGAGG
  AGGAGGAGAA GGAGAAGAAA GAAAGAAGAA AGAAGAAAGA AGAAAGAAGA AAGAAGAAAG
  AAGAAAGAAG AAAGAAGAAA GAAGAAGCTG TCTAATGACA GCCATGTTCT TTGGTCAGGT
  CCACAGATAT TGCCAGACAG CACAGTCAAT TATACAAAGA CCCAGATTTA GGTGAGGCAA
  M
  TTATGCTTAC TGACTTTGTG TCAGACCCAT CCTTTATTAC CCCAGGACCA CATTGGCAGC
  AGAGGGGCCT GATGGAAGGC TAATGTCTGC TCCTTTTACT GAGTGAGCAC CAACGGTCTC
  TTCTGCACTC TTTCTGCAGC TGACTCCTGC CCCCAAGGTT TCCTGGAGGG AGGGAAGGAT
  GACCACCTGA AGACTTGATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss51820884	NES14712598	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs36419489					SNP	C	C	C	C	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51820884	NES14712598	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:126166851 () rs orientation: forward

Symbol	Name	Function Class
D5Mit214	DNA segment, Chr 5, Massachusetts Institute of Technology 214	389 bp proximal