rs36419642 SNP Detail

Summary

• ID
  rs36419642
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:27722287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGCCCAG AGAGAGCGTT
  GCTCAGGCCC AGTCCCCCAT GACCTTTGTT TTATGCCCTT GGAGGCAATC ATAGTGAGTG
  TGGGCCCCTA AGATGCTGAT GGTGGACCCC CAAGTTAGAA GCCCCAAGGA TGTGTCTGGA
  AGAATAGCAA TCTGTGGTGA GCAGAGGCAG CAGCCACTTG GTGGACAGAA GTTCTTAAAG
  Y
  AGGAAGTTTT GTCCTGGAGA GAAGGCAGAA GCTGTGGTTC CATGGACATT GACACGGGGT
  GCTTGTATAT GTATTTACAC GACACGGCAG TAAGAAACCC ACGAAGGCTT ATGTGACTGT
  GGCCCGGTAC CTTGTCTAAG ACCACGTATG TTAAAGGTGA GTGTGTATAG TACATATATG
  TGTGTTTTCT ATTTTTTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51947189	NES14964906	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36419642					SNP	T	T	T	T	T	T	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51947189	NES14964906	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:27722287 () rs orientation: forward

Symbol	Name	Function Class
Adrb3	adrenergic receptor, beta 3	1454 bp upstream
Gm45470	predicted gene 45470	within coordinates
Gm63998	predicted gene, 63998	1122 bp downstream
Rr381848	regulatory region 381848	1647 bp upstream
Tssr80798	transcription start site region 80798	1412 bp upstream