rs36419794 SNP Detail

Summary

• ID
  rs36419794
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131455865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGCGCAGG CAATTCAAAC
  TGACAGCGGG TTAGAAAAAG CAGAGAAAGC GGAAGAAAGA GCAAAACCCG GCGTGTTCGC
  TGACTGACTG CAGCGCGAAC TGAGCCTATT CCGAGGCTTC TCCCCTCCAC CTCGCTACAC
  CGCTGCTCAC TTCGGAGCGA CCGCTGTGGA AGAGACCTTA CGGGTTACGG GCCGCAAGTG
  S
  GAGAGCTCGG CCGGGAGAGG ACGCCGAGAG CCGTGGTGCA AGGGAGAAAG CCCACGGGCG
  AGCTCCGAGA AGAGGGAGCG GGACGGGGCC AGAGCCCGCG TGGAAAGGGC TGAGGGGCGT
  TGAATCCTAC GAAGAAGCCG CGTGGAGCTG AGCAAGAATT GGAGCGCTCT GCGGGCGGAG
  CTCGCGCTGG GAGTGGTCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51368040	NES14475975	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36419794					SNP	C	C	C	C	C	C	G	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51368040	NES14475975	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131455865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi711	CpG island 711	within coordinates
Fam72a	family with sequence similarity 72, member A	within coordinates
Gm70877	predicted gene, 70877	439 bp downstream
Rr396286	regulatory region 396286	544 bp downstream
Rr396287	regulatory region 396287	234 bp downstream
Rr418129	regulatory region 418129	1493 bp distal
Rr418130	regulatory region 418130	1878 bp distal
Rr418131	regulatory region 418131	791 bp distal
Rr418132	regulatory region 418132	214 bp distal
Rr418133	regulatory region 418133	7 bp proximal
Srgap2	SLIT-ROBO Rho GTPase activating protein 2	775 bp upstream
Tssr8629	transcription start site region 8629	256 bp downstream
Tssr8630	transcription start site region 8630	216 bp downstream
Tssr8631	transcription start site region 8631	125 bp downstream
Tssr8632	transcription start site region 8632	234 bp upstream
Tssr13598	transcription start site region 13598	1579 bp upstream
Tssr13599	transcription start site region 13599	1537 bp upstream
Tssr13600	transcription start site region 13600	1382 bp upstream
Tssr13601	transcription start site region 13601	834 bp upstream
Tssr13602	transcription start site region 13602	742 bp upstream
Tssr13603	transcription start site region 13603	587 bp upstream