rs36419906 SNP Detail

Summary

• ID
  rs36419906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54442642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTCTTTG CTACAGACAC
  TCTTATGTAG TGTGCCTCTT GCACAACTAC ACACTTAGTC CCAAGACAGG GATCCCTACT
  GATGTGAAAG TTCCTGGTAT AGTTCTTTCT ATACAGTTAT CTGAATAGAG AGCTGGAAGC
  TGCAGGTTGT GTCTATTGCT CCTGCTGACA AGGCTACATT GCAGGGTGGA AGGTGCCTGT
  Y
  GCCTGGGGAC TCACATTCAA CGACAGACTG TCTTTAGTTT GCTCACTTGA GCCAGAACCA
  ACCACAGACT GCACCTTGAA GGCCTCAGAG TCAGTCAAAG AGCTCAGAAG GTTCTCTATC
  AAGGGCTGAA AATCTGTCTC AATTTAGAAC TCTAGGCCAC TGTCTGAAAG GATCCTGAAG
  CAGATCCAAT TCAGGCTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52018457	NES15032650	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36419906					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52018457	NES15032650	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54442642 () rs orientation: forward

Symbol	Name	Function Class
Gm54935	predicted gene, 54935	1827 bp upstream
Gm69041	predicted gene, 69041	within coordinates
Rr679144	regulatory region 679144	1202 bp distal
Rr679145	regulatory region 679145	847 bp proximal
Rr679146	regulatory region 679146	1743 bp proximal
Sh2d7	SH2 domain containing 7	within coordinates
Tssr85159	transcription start site region 85159	1231 bp downstream