rs36420568 SNP Detail

Summary

• ID
  rs36420568
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38222748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCAGAGA AATCCTTACG
  GAAGCGTTTA AGTGGGAAGA AGGGACAAGC TTACTTTGCC CACAGGCCCC ATACACGCAG
  GATATTGTGA GACTGCACCC ATGGTCCTCT GCTGGATCTG ATTTTGCCAT TGCACCAATC
  CAGAGACATT TTTATATGTC ACACCTGGGC TGAGACACTA GTGGTATCTG GTAGGTAGTT
  S
  CGCATAAGAC AACCTCACAG CAGAGGATTG ACTAGTTGAG AGCATTCACA TAGTTGTGCC
  TTTAACATAC CTGTCTAGAT TATTAGATTT GTAAGTGAAG AGTAATTTAT GTATGATACT
  TATGAAGCCC TAGTAAACTG CAGCTATCAA ATGATAGTCT CCTTCCTACT CATGCCCGTG
  GGCATTTAAA GCCCTGTGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51098371	NES14356818	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36420568					SNP	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51098371	NES14356818	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38222748 () rs orientation: forward

Symbol	Name	Function Class
Cage1	cancer antigen 1	1703 bp upstream
Cpgi5461	CpG island 5461	1142 bp distal
Riok1	RIO kinase 1	within coordinates
Rr281252	regulatory region 281252	347 bp distal
Rr369679	regulatory region 369679	1317 bp downstream
Tssr119342	transcription start site region 119342	1462 bp downstream
Tssr122123	transcription start site region 122123	1859 bp upstream
Tssr122124	transcription start site region 122124	1825 bp upstream
Tssr122125	transcription start site region 122125	1614 bp upstream
Tssr122126	transcription start site region 122126	1588 bp upstream
Tssr122127	transcription start site region 122127	840 bp upstream
Tssr122128	transcription start site region 122128	820 bp upstream
Tssr122129	transcription start site region 122129	788 bp upstream