rs36421030 SNP Detail

Summary

• ID
  rs36421030
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113367996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCTTTGT CATGGATTAT
  CTCCCAAGGT CCAAAGTCCC TAAAACCAGA TTTGCACGCT GAGAACAGAC CAGATTGCTG
  CCAACCAACC AATTCTCCTG GGAAATTCCA TTAACTAGGC AATATCTGTG ATTGGGTTTG
  GCTGGACAGG CCGGGGTCGG GGAACCACCT TCACTCCAAA GGCACATTTG CTGACAGCTG
  R
  CTTCTTGGAC TGCTTGAATA GACACTGGTA GAATTGACCT CTAAAACTCC ATTTGATGCT
  TCTGAGCCTC CTTCCCCCCC AACACACACA CAGCAAGCTC AAGTGGCTGA ACATGTAGCT
  CAGTTGCTAG ACTGCCATGA ATTCTATCCC AACACAGGCA TGGGCGCAGT CTAGTTGAAA
  GTCTGCCTAG GGTAAATGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51841819	NES14761266	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36421030					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51841819	NES14761266	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113367996 () rs orientation: forward

Symbol	Name	Function Class
Arpc4	actin related protein 2/3 complex, subunit 4	587 bp downstream
Cpgi17842	CpG island 17842	1132 bp proximal
Rr636505	regulatory region 636505	1005 bp proximal
Tssr58202	transcription start site region 58202	1976 bp downstream
Tssr58203	transcription start site region 58203	1922 bp downstream
Tssr58204	transcription start site region 58204	1815 bp downstream
Tssr58205	transcription start site region 58205	1776 bp downstream
Tssr58206	transcription start site region 58206	1754 bp downstream
Tssr58207	transcription start site region 58207	319 bp downstream
Tssr58208	transcription start site region 58208	1382 bp upstream
Tssr58209	transcription start site region 58209	1475 bp upstream
Ttll3	tubulin tyrosine ligase-like family, member 3	within coordinates