rs36421174 SNP Detail

Summary

• ID
  rs36421174
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101205591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATAATTT AATTAAAAAC
  CTGTGAGATG ACATGAAGTT TTGATTCCTC CCTCTCTCCC TCTCTCCCTC TCTCCCTCTC
  TCCCTCCCTC CCTCCCTCCC TCCCTCCCTC CCCCCCTCCC TCCCTCCCTT CCTTCCTTCC
  TTCCTTTCCT TCCTCCTTCC CTTCCTTTGA TAGGATCTTG CTGTGTACAT TAGGAGGGTC
  K
  TGAACTTGTG ACTTCACTCC CCCATTTCCT GGGTTAGGAA TATAAGCATG GCACACTTGG
  CCTGACTAAA TTTAGGATAA TCTATTTATT TTGGAAATGT ATTAGCTTAT AAAGAATTGG
  GTTTTTATTA TGGTTTTGTC AAAATATTTT AATTTTTTCC TCTACCAACA GTTCCCCCAC
  TCTCTTTCTT TTGTGTTTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50784753	NES14209222	PERLEGEN	MM_PANEL2	f	SNP	G	G	G		T	T	T		G
ss323149604	CHEV_9_101230722	CHEVERUD	SCREENING_POP	f	SNP				T				G
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36421174					SNP	G	G	G	T	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50784753	NES14209222	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101205591 () rs orientation: forward

Symbol	Name	Function Class
Rr198413	regulatory region 198413	10 bp proximal
Rr206996	regulatory region 206996	992 bp distal