rs36421376 SNP Detail

Summary

• ID
  rs36421376
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65542394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTATAAT CATCTTGCTC
  TCGTAACCAC ACCTAGAGCA AAGGATCTGG CAATTTTATG GTGTGGAACT GAAGCAGCCT
  CCGGCCCCTT GGGGGTAGAC ACACAAAATA GAGGTTTCTG AGGTGCATTC CTGTGTTTTA
  CAGATGGACG AGGAGGAGGC TGCAGAGAGC CTGAGGGCAG AAACTGTCTG GACAGACCAC
  K
  CTATCAAAGA GCATTGGAAA GGCTGCTCTG CATCCTGTCC AGTTTCACAC ACAGTTCCTG
  GATGTCTCTC TGGGACCCCC AAAGGGCTCT ACCACTGGGC TACTGATTCT ACTTCTAGCT
  TCAACCCGAT TCTCTGGAGT CAGAATCAAG CATATCTTTA AAAAAAAAAG AAAGAAAGAA
  AGAAAGAAAG AAAGAAAGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50965404	NES13945827	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36421376					SNP	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50965404	NES13945827	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65542394 () rs orientation: forward

Symbol	Name	Function Class
Rr577715	regulatory region 577715	1089 bp proximal