rs36421577 SNP Detail

Summary

• ID
  rs36421577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:37131630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTACCAT AAAAAGGTTG
  AGGCTGAAAA TGTCAACTCT GAGATGTCAG AGAATTTTGA TGTTCTCAAA GCAATGTTAA
  TTTGCTTCCT CTCAGCCATT TTCGTGTTTG CCAAGAGGAA ACAACATGGC TCCCTCTGAG
  AGACACTGAG TAAGTGCATC TTAAGTACAC TACAAGGTTC CTCCCTCTCC TGGCTGGACA
  Y
  AGACAAGACT TTGTTGATTC TTTGGGACAA GAACAGAAAG GCTCTTTGTG GTCCTGATGG
  GAGGAATCCA TGCCTGGGAA GTGCCACGAG GAGCGAGATT GTCCTGTAAA AATCCATGGC
  AGCCACCTCT GCTCATCATG ACAAGGGTGT TTGTGGCTTG GATGCAGATT GAATGTGCTC
  CTCCAAGAGG TGGGACTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51642016	NES14591113	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36421577					SNP	C	C	C	C	C	C	C	C	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51642016	NES14591113	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:37131630 () rs orientation: forward

Symbol	Name	Function Class
Gm41301	predicted gene, 41301	1837 bp downstream
Gm41302	predicted gene, 41302	within coordinates