rs36423198 SNP Detail

Summary

• ID
  rs36423198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143506106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTAACCT ATCTTTCTTC
  ACTCCTAGAT TAGACTTGCA GGAGAGCAGG AGGTAATGGA TCTCTTCCAC TGTTGTATAG
  TGTTCATTTG ACCTCTGAAC TCCATTACAG CCTCTTATGG AAGCCAACAA ACATGGCTGA
  CTGCATCTCA GCCACTGAAG GGCTAATTAT GGTTTATTGT TTATTCTCTT AGCCTGGAAA
  R
  GAAGTACAAT GGTGAATATC TTCTTAAATA TTCCCTTTGG CCAAAAATAA GTGTGTTGTG
  AGCAGATGGG ATCAGATCCA TAGGTGAAAA GCAAATTCAC CTACTGTCAT CAAAAAGGGT
  AGGGACACCA TTTTCATAGT TTTGAGTTGA ACATGGGTTT GCCGCAAGCC CATTGAAAGA
  AAGTAAGTTC CTGAAAGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51660290	NES14644454	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36423198					SNP	G	G	G	G	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51660290	NES14644454	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143506106 () rs orientation: forward

Symbol	Name	Function Class
D3Mit198	DNA segment, Chr 3, Massachusetts Institute of Technology 198	704 bp distal
Gm42705	predicted gene 42705	within coordinates