rs36424141 SNP Detail

Summary

• ID
  rs36424141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149149045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTACACTC TCTATCTGTC
  TGAGTCTCCC TGTGGGGTTT GGGGCAATGA GTGGGACTCC CATCCAAATC CCTTTGGCTG
  TAGGAGAGTC TCCCTTGACC ATAATCCTTT TCCCCCTGTA GTACTGAGGC TCATATGAAA
  AACTACAATG ACAATGACTG CGCAGGACAT ATTCAAGAGC AGCCCCATGG CTCCCACAGA
  Y
  ACTTTCAATC AGCCTTTCCT GGCAAGCCTC AGCTTACTGT ACAGCTCAGT AAAAGAGTTT
  GAAAAGAAAC TCTAATTGCT AGGTAAGCCA TAAGTCAAAT TCCTCTTTTC TCACCGTGAA
  GGGTTTTTAT TACCCACGGC TGTAAATGCC AGCCCCCATC CTTGCAGAAT AGCTTTCAGA
  CCAGAGGACA AATAAAATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51052146	NES13892896	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36424141					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052146	NES13892896	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149149045 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	within coordinates
Gm30382	predicted gene, 30382	within coordinates
Rr587324	regulatory region 587324	1375 bp proximal
Rr587325	regulatory region 587325	1774 bp proximal
Tssr36100	transcription start site region 36100	1778 bp downstream
Tssr36101	transcription start site region 36101	1845 bp downstream
Tssr36102	transcription start site region 36102	1859 bp downstream
Tssr36103	transcription start site region 36103	1943 bp downstream
Tssr36104	transcription start site region 36104	1968 bp downstream