rs36424532 SNP Detail

Summary

• ID
  rs36424532
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9962514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCAAAGC CACGTGACTT
  TACTGGTCAC TGAGGCAGTG CATGCATGTC AGGCTGCCTT CATCTTTTCT ATAAGTTGCA
  CCAAAACATC TGCTTAAGTT CTTTAATTTG TACCATTTCT TCAAATAAAG AATTTTGGTA
  CCCAGCTTCT TTTCTTTGTG ATTGAGGATA AGCATTCCAG CTTCCAGTTG CTTCACCGCC
  R
  GTTATACTAA TCACACTGAA ACACCTAAAA GAATATTCAC GTTTATTAAA CTCCTTAGTT
  TGGGAAAGAT CGTAAAATAC AGGTGTTTTC AGGCAGGACT ATTAAGTACT CTTGGTTCTG
  AGTTACATGC TAGACTGTCG TGGGAACACA CTCCTGGGTG TCGCTGCTTG TGTGCCTTTG
  ACTGGGTCAG TGCCCTGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50605192	NES13645677	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36424532					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605192	NES13645677	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9962514 () rs orientation: forward

Symbol	Name	Function Class
Best1	bestrophin 1	24 bp downstream
Cpgi10595	CpG island 10595	1765 bp distal
Fth1	ferritin heavy polypeptide 1	52 bp downstream
Rr543966	regulatory region 543966	1148 bp distal
Rr543967	regulatory region 543967	568 bp distal
Tssr155006	transcription start site region 155006	931 bp downstream
Tssr155007	transcription start site region 155007	858 bp downstream
Tssr155008	transcription start site region 155008	567 bp downstream
Tssr155009	transcription start site region 155009	221 bp downstream
Tssr155010	transcription start site region 155010	33 bp downstream
Tssr158137	transcription start site region 158137	913 bp upstream
Tssr158138	transcription start site region 158138	824 bp upstream
Tssr158139	transcription start site region 158139	531 bp upstream
Tssr158140	transcription start site region 158140	310 bp upstream
Tssr158141	transcription start site region 158141	282 bp upstream
Tssr158142	transcription start site region 158142	257 bp upstream
Tssr158143	transcription start site region 158143	191 bp upstream
Tssr158144	transcription start site region 158144	53 bp upstream