rs36424630 SNP Detail

Summary

• ID
  rs36424630
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69838947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGACACTC CAGAAGAGGG
  CGTCAGGTCT CATTACGGAT GGTTGTGAGC TACCATGTGG TTGCTGGGAT TTGAACTCAG
  GACCTATGGA AGAGCAGTCA GCTCTCTTAA CTGCTGAGCC ATCTCACCAG CGGATTTAGC
  TATTAAAATA GATGGTTAAT GGCTTCTAAT GGTTTTAATA TGAATTTGAC TTTTAACCTT
  Y
  CCTATAGATG TGTTCTCGCT TCAGGATTCT AAGAGACTTA TGGAAATTTT TTGGCGCCAA
  CACCTCTCTC TTCCCCAGTG GGCTGCAGTT CTCACTTGGG ACATGGCAAA AGGCAGAAGG
  ACAAACAAAC AAACAAACAA AACCCCTCTA GTTGATTGAA TTAAGTACAA GATGGCGATC
  TTATTACTAA TTTCCATACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51016661	NES14398443	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36424630					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51016661	NES14398443	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69838947 () rs orientation: forward

Symbol	Name	Function Class
4930512B01Rik	RIKEN cDNA 4930512B01 gene	within coordinates
Cdkl1	cyclin dependent kinase like 1	906 bp upstream
Cpgi4702	CpG island 4702	773 bp distal
Rr257091	regulatory region 257091	within coordinates
Rr265514	regulatory region 265514	346 bp distal
Tssr116527	transcription start site region 116527	1900 bp upstream
Tssr116528	transcription start site region 116528	1897 bp upstream
Tssr116529	transcription start site region 116529	1875 bp upstream
Tssr116530	transcription start site region 116530	1542 bp upstream
Tssr116531	transcription start site region 116531	1438 bp upstream
Tssr116532	transcription start site region 116532	880 bp upstream
Tssr116533	transcription start site region 116533	878 bp upstream
Tssr116534	transcription start site region 116534	850 bp upstream
Tssr116535	transcription start site region 116535	835 bp upstream
Tssr116536	transcription start site region 116536	809 bp upstream