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rs36427403 SNP Detail
Summary
  • ID
    rs36427403
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr5:45826979 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CGCCCGGACC CACGGGGTCC
    GAAGGACTGC GGAGGCCCTC GTCCAGGACG CCCTCGGAAA GTTTGACATC CCCAAGCCCC
    GGGCGGGCTC CGTACGACAT CTCCCAAACG ACTCCTTCGC TCGGGATTTA CCCGTTCTCA
    GCCAGTCGCT GCGGCAGTCC TCCGCTTTCT CCCTTCACTC CCAACCACAA GATCCCGCAA
    S
    GCACCGAAGG CCACCAGTTT AATTCAGAAA GCTGAACGCC CACTTCAGGC GCGCTCCTCC
    ACAGCACTAC TTCCGGCCCC GCCCATGCCT CCCATACAAA CACCTTTTCC TATTGGGAGA
    GCGGCAGGCC ACACCCCAGG CGTCCCAGCA GCGGGGCGGA GCGGAGGGTG GAGTCAGCTC
    CGGGACCCTC AGGTCTCCGC                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss51715781 NES14748545 PERLEGEN MM_PANEL2 f SNP G G G G G G C G G G C G C C G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs36427403 SNP G G G G G G C G G G C G C C G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51715781 NES14748545 PERLEGEN MM_PANEL f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:45826979 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
1600023N17Rik RIKEN cDNA 1600023N17 gene within coordinates
Cpgi15841 CpG island 15841 within coordinates
Ncapg non-SMC condensin I complex, subunit G 282 bp upstream
Rr367838 regulatory region 367838 within coordinates
Rr611093 regulatory region 611093 1010 bp distal
Rr611094 regulatory region 611094 1126 bp distal
Rr611095 regulatory region 611095 721 bp distal
Rr611096 regulatory region 611096 within coordinates
Rr611097 regulatory region 611097 33 bp proximal
Tssr46141 transcription start site region 46141 247 bp upstream
Tssr46142 transcription start site region 46142 270 bp upstream
Tssr46143 transcription start site region 46143 367 bp upstream
Tssr46144 transcription start site region 46144 596 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory