CGCCCGGACC CACGGGGTCC GAAGGACTGC GGAGGCCCTC GTCCAGGACG CCCTCGGAAA GTTTGACATC CCCAAGCCCC GGGCGGGCTC CGTACGACAT CTCCCAAACG ACTCCTTCGC TCGGGATTTA CCCGTTCTCA GCCAGTCGCT GCGGCAGTCC TCCGCTTTCT CCCTTCACTC CCAACCACAA GATCCCGCAA S GCACCGAAGG CCACCAGTTT AATTCAGAAA GCTGAACGCC CACTTCAGGC GCGCTCCTCC ACAGCACTAC TTCCGGCCCC GCCCATGCCT CCCATACAAA CACCTTTTCC TATTGGGAGA GCGGCAGGCC ACACCCCAGG CGTCCCAGCA GCGGGGCGGA GCGGAGGGTG GAGTCAGCTC CGGGACCCTC AGGTCTCCGC S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss51715781 | NES14748545 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | C | G | G | G | C | G | C | C | G |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs36427403 | SNP | G | G | G | G | G | G | C | G | G | G | C | G | C | C | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss51715781 | NES14748545 | PERLEGEN | MM_PANEL | f | SNP | C/G |
Location: Chr5:45826979 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
1600023N17Rik | RIKEN cDNA 1600023N17 gene | within coordinates | ||||||
Cpgi15841 | CpG island 15841 | within coordinates | ||||||
Ncapg | non-SMC condensin I complex, subunit G | 282 bp upstream | ||||||
Rr367838 | regulatory region 367838 | within coordinates | ||||||
Rr611093 | regulatory region 611093 | 1010 bp distal | ||||||
Rr611094 | regulatory region 611094 | 1126 bp distal | ||||||
Rr611095 | regulatory region 611095 | 721 bp distal | ||||||
Rr611096 | regulatory region 611096 | within coordinates | ||||||
Rr611097 | regulatory region 611097 | 33 bp proximal | ||||||
Tssr46141 | transcription start site region 46141 | 247 bp upstream | ||||||
Tssr46142 | transcription start site region 46142 | 270 bp upstream | ||||||
Tssr46143 | transcription start site region 46143 | 367 bp upstream | ||||||
Tssr46144 | transcription start site region 46144 | 596 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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