rs36428261 SNP Detail

Summary

• ID
  rs36428261
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:50000606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGTAACA CCAGTTCCCG
  ATAGAGCCTG GATCCTTTAT GTTGTAGATA GTGACCATGG TAACACCAGT TCCCGATAGA
  GCCTGGATCC TTTTTTTTTT TTTTTTAACC ATATTATCTC TGGTCTTAGA AGCATATCCC
  CTTGGCAAGC ATCATCGTGT GTGCTGAAGG TTGCAAACAC ACCCTTGGAC TCTGCATTTT
  W
  ACAGAAGAGA AATGTCATCC ATGTCTCTCA TCCCTTGCAG ATGTTCCAGA AAGCCTCTTT
  GAAGAAGCTC AGACTTATCC CTAGCACAGG ATGATGTGAG AAGCCTTTCA AGTTTGGTTT
  TCTTCCCTGA AGATCCTTTC TTGTGTGGTG CTGCTCTCAT AGAGAACCTG AACTTGGTTC
  TCAAAGCCCA AATAGTGAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51109301	NES14348467	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36428261					SNP	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51109301	NES14348467	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:50000606 () rs orientation: forward

Symbol	Name	Function Class
Rr286159	regulatory region 286159	1020 bp distal
Rr286160	regulatory region 286160	within coordinates