rs36428328 SNP Detail

Summary

• ID
  rs36428328
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20370579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCATTATA CTCTTGATAC
  TATTTTATAA TTATAGTCAC AGTTCTTTTT CTGGTCGGAT TTTATTATCA GGTTGAAGAT
  CACCGGCCAG AGTTACATGG CATTGTGTAG ATTCAAAGGA GTAATCTAAA CAAACCCTAC
  AGGTCAGATC AGAATAATTG GGCTCAAATC TGCATGTAAG AAAGGTTACA TTGTGCAGAC
  S
  GTGAAAGAGT GACCATCACA CCAGCATCTC ACTGTCATTT TCACTCAATG GAGAAACAAC
  TCTTACAAGT AAAGCCTGCA CCATAGCTTT GTGCAGGTGT CAGGCAGCCA GCACTCATGC
  TTCAGCCAGC ACTCACACTT CTTCACACGA GGGGCCCAGG ACCACTTACA TTTTGCCTTT
  AAAGAGATTA TCTAGTGATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51076099	NES14368665	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36428328					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51076099	NES14368665	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20370579 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5309	CpG island 5309	893 bp distal
Elmo1	engulfment and cell motility 1	within coordinates
Rr270988	regulatory region 270988	1379 bp distal
Rr270989	regulatory region 270989	579 bp distal
Rr281054	regulatory region 281054	578 bp distal
Rr403595	regulatory region 403595	1045 bp downstream
Tssr118580	transcription start site region 118580	1420 bp downstream
Tssr118581	transcription start site region 118581	1398 bp downstream
Tssr118582	transcription start site region 118582	1108 bp downstream
Tssr118583	transcription start site region 118583	1045 bp downstream
Tssr118584	transcription start site region 118584	999 bp downstream
Tssr118585	transcription start site region 118585	982 bp downstream