rs36429180 SNP Detail

Summary

• ID
  rs36429180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:24867633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGTTCTA TATCCACTGC
  AGGAAACAAC CTGATCTACT CTAGTCAACA GTTATTTGTA CTATTATTAA GGTTTTCTTC
  AACTTGGCTG CTACCCCTGT GCTTGTGAAA TAGCTTAGTC AATAAAAAGC CAATCAAAGG
  AGACCCATTC TGGACAATAC CCAGCCTGTC ACTGAGAACG CACCAATGAG CTTTTCTGCC
  Y
  AGTTTCAAGT GTTAAACCAA TTTTCCTAAC TTTTTCTTTT CAAACTGTGA AAAAAATAAT
  TAGTTTTAAT ATCAGTTTCC AACAAAGTAA TTAATTATAT TGAGTTGATC AAATACTTGT
  GAGTTTATTC CAAGACTTTA AATACACATC CTGATGTCCT TGTCTAGATT CAGGTCTGGC
  CCATATTCTT TTAATAATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50652931	NES14021631	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36429180					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50652931	NES14021631	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:24867633 () rs orientation: forward

Symbol	Name	Function Class
Gm18377	predicted gene, 18377	1243 bp downstream
Gm68954	predicted gene, 68954	307 bp upstream
Rr675442	regulatory region 675442	123 bp proximal
Rr675443	regulatory region 675443	318 bp proximal