rs36430639 SNP Detail

Summary

• ID
  rs36430639
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52215606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACAAAGC TATTCAAGTG
  TTATTATCAA AAGAAAGTAC CCCCTTTTCT CCAGGAAAAG AAAAAGGTTA ATATATTTCT
  ACACCCAACC ATGTCTACAA ATCTGCCCTG CTCTATTTTA TTGGGGGTAC TTTCCCCAAT
  CAAGGCTAAT CTTCCACTTA CCTGAGTGCC CCGGCTCTTT CCAGGAACCC TATATTGATT
  R
  CTATCTCTCT AGGGTCTACT CTAACCTCTA ATTCTTGACA GGATACATTT TATCAGCAGT
  GGAGAGTTCT GGGACCTTTA TATTTCAAAG CAAATACAAA TTCTTTAAAA AATAGGAGGC
  AGGGTTAAGT TACCCAGCAA CAATAAAAAT GTCCATAGCA CCTACTCTTA GCACTCTTTA
  AGTAAAATGG CATCTTAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50950451	NES13932101	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36430639					SNP	G	G	G	G	A	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50950451	NES13932101	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52215606 () rs orientation: forward

Symbol	Name	Function Class
D1Ncl2	DNA segment, Chr 1, Nicolas C. Levy 2	361 bp distal
Gls	glutaminase	within coordinates
Rr22237	regulatory region 22237	1006 bp distal
Rr33831	regulatory region 33831	within coordinates
Tssr6673	transcription start site region 6673	929 bp upstream