rs36430974 SNP Detail

Summary

• ID
  rs36430974
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:39570705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCAGCCC TTGGTTTGGG
  TTTTTGGGCC ACAAAAGGTC CAACCCAGCA ATAGTTCAGG TGGAAACTTA CCTGAAGTTT
  GGCTTCTGGT AACTAAGTTT CAGTTTCCTT CTCGTTGATT TATTATTACT TTTCGCCCTT
  TCATTATGGG GCTACAGCTT GATTCAGGAG TCTAATGATA GACCACTTGT CTTGGGTCTC
  Y
  GAGTCGTCAG AGTGGGATCC CTGTGAATGC CAGCTTCAGT ACTGGCTTCC CAGGCATTTG
  TGCTCAGTTA CTGATACTTT TTTTTTTTTT TTTAAGATTT ATTTATTTAT TATATGAAAG
  TACATTGTAG CTGTCTTCAG ACACTTCAGA AGAGGGAGTC AGATCTCGTG TACGGATGGT
  TGTGAGCCAC CATGTGGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51616920	NES14842129	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36430974					SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51616920	NES14842129	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:39570705 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17326	CpG island 17326	672 bp distal
Gm16272	predicted gene 16272	951 bp upstream
Gm42420	predicted gene, 42420	within coordinates
Ndufb2	NADH:ubiquinone oxidoreductase subunit B2	within coordinates
Rr146179	regulatory region 146179	104 bp distal
Tssr55732	transcription start site region 55732	1183 bp downstream
Tssr55733	transcription start site region 55733	1154 bp downstream
Tssr60497	transcription start site region 60497	1217 bp upstream