rs36432218 SNP Detail

Summary

• ID
  rs36432218
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91736641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTTCCCG AGGCCCTGCC
  TGACATTTTG ACATGGGTTT TGGTCAAACT TGGTGCTTGT AAGCCAAGCA TATCACCTGG
  ACTCAGCCAC CGCCACCCAC AGCCTGGTGC TGTGAAACAA AGCAGGAGCC ACATTGTTGT
  CCGGGAGCTA CACTGTTATA CATTCTTACT AAGTCTTCAC ATCTCACATG GTTAAGTTTC
  Y
  GTTTCCTAAG CCTAATGTAT CCTGAAGACC ATGTTTTTCA ACCTATGTGG AACTAGTGAC
  CCCATGATAT ATACCCACTC CTTTGCCTTG CTAAACTGAA CCTGTGACAT AGGATTGCCC
  CATGAAAATG TGTCTTCCCA GATACAATGA TGCCTCCCCT TGCACATGAT GCATGCTTGC
  ACTTCTCACG GGCAGCCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51366819	NES13739614	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36432218					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51366819	NES13739614	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91736641 () rs orientation: forward

Symbol	Name	Function Class
Grip2	glutamate receptor interacting protein 2	1849 bp downstream
Rr141761	regulatory region 141761	1241 bp distal
Rr379752	regulatory region 379752	475 bp downstream
Slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	597 bp downstream
Tssr57753	transcription start site region 57753	1831 bp downstream
Tssr57754	transcription start site region 57754	1735 bp downstream
Tssr57755	transcription start site region 57755	1639 bp downstream
Tssr57756	transcription start site region 57756	1599 bp downstream
Tssr57757	transcription start site region 57757	1574 bp downstream
Tssr57758	transcription start site region 57758	1538 bp downstream
Tssr57759	transcription start site region 57759	1314 bp downstream
Tssr57760	transcription start site region 57760	1258 bp downstream
Tssr57761	transcription start site region 57761	1241 bp downstream
Tssr57762	transcription start site region 57762	1200 bp downstream
Tssr57763	transcription start site region 57763	1176 bp downstream
Tssr57764	transcription start site region 57764	1152 bp downstream
Tssr57765	transcription start site region 57765	1119 bp downstream
Tssr57766	transcription start site region 57766	1093 bp downstream
Tssr57767	transcription start site region 57767	1022 bp downstream
Tssr57768	transcription start site region 57768	1012 bp downstream
Tssr57769	transcription start site region 57769	812 bp downstream
Tssr57770	transcription start site region 57770	701 bp downstream
Tssr62095	transcription start site region 62095	1308 bp upstream
Tssr62096	transcription start site region 62096	1026 bp upstream
Tssr62097	transcription start site region 62097	819 bp upstream