rs36433142 SNP Detail

Summary

• ID
  rs36433142
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90174277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTACAGA CACCTAAGGA
  TCCTGGAGAT GGGAAAGTCC TGGTTGCTTG GCCAACTAGG TAAAGTTAAG CTAGGGAAAA
  AAAAGGATAC TTGAAATCTG ATGAGCAGAA GCTAAATCTT GGGTTTTGTA AGCCTTCCTA
  GGCATCTGTA AAGTCTTCTA GAAATGAAAG GATGGGTGCT TTAAGAACAT TAGCTGCATC
  R
  GAAGGTTCTT GTGGTGTTGC TACAAGAGCA GAGACCTTTG ACAAAGCAAA AGTTGGTGTA
  ATGTGGTAGC CAGAGTGAAT GATGTCATTG CAGGCCATTA CAGAAAATAC TGTGTTCTCT
  GAGACGTAAT TGTAGCGGGC AAGGAGAGGC AGGCCTTTAA AGGAATAGGT GAGGAATATG
  TCAGTTGTGT GTTGTAGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50992060	NES13923866	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36433142					SNP	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50992060	NES13923866	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90174277 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13456	CpG island 13456	775 bp distal
Dennd4b	DENN domain containing 4B	within coordinates
Gm65083	predicted gene, 65083	574 bp upstream
Rr397807	regulatory region 397807	1893 bp downstream
Rr580320	regulatory region 580320	1775 bp distal
Rr580321	regulatory region 580321	1851 bp distal
Rr580322	regulatory region 580322	585 bp distal
Rr580323	regulatory region 580323	1553 bp distal
Rr580324	regulatory region 580324	446 bp distal
Rr580325	regulatory region 580325	98 bp distal
Tssr30184	transcription start site region 30184	1982 bp downstream
Tssr30185	transcription start site region 30185	1032 bp downstream
Tssr30186	transcription start site region 30186	1003 bp downstream
Tssr30187	transcription start site region 30187	469 bp downstream
Tssr30188	transcription start site region 30188	404 bp downstream
Tssr34202	transcription start site region 34202	1395 bp upstream
Tssr34203	transcription start site region 34203	573 bp upstream