rs36433279 SNP Detail

Summary

• ID
  rs36433279
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68600860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTGCTGCC AAATACCAGC ACTGGGCTTC GAGACACAAT
  AGAATTCGAC CTTGTTTTCG TTTGGGTCAC TATTGCTCTC TAGTTGAACA CGGAATCCAC
  K
  GGGGCACATT GCTGTCTGTC CTTTGTCACA CCCCAGGACC ACAGCTGCAT GGAAAAGTCA
  TCGCAGGCTT CAGTCAGAGA GCTGTTGACT TCCTAATATG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51541934	NES14683619	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36433279					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51541934	NES14683619	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68600860 () rs orientation: forward

Symbol	Name	Function Class
Il12a	interleukin 12a	within coordinates
Rr578060	regulatory region 578060	within coordinates
Tssr29484	transcription start site region 29484	1877 bp downstream
Tssr29485	transcription start site region 29485	1592 bp downstream
Tssr29486	transcription start site region 29486	1570 bp downstream
Tssr29487	transcription start site region 29487	1458 bp downstream
Tssr29488	transcription start site region 29488	1440 bp downstream
Tssr29489	transcription start site region 29489	166 bp upstream
Tssr29490	transcription start site region 29490	212 bp upstream
Tssr29491	transcription start site region 29491	503 bp upstream
Tssr29492	transcription start site region 29492	551 bp upstream
Tssr29493	transcription start site region 29493	568 bp upstream
Tssr33509	transcription start site region 33509	1314 bp upstream