rs36433288 SNP Detail

Summary

• ID
  rs36433288
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17813674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGGACAT TGAAATCCAG
  GCCATTTAAG CCAGAATACA AATCGGTGGC GCTGCCAAGG GTCCCATAAA ATGTATTGGC
  ATTTCCCTCA GCATGGCAAA TCGAACGAAA ACCCACCAAA GGCACCTCAG CAAAGCATTC
  CTGCCACACG CCACAACCGG GTACCCCAGG TTCCACGCCA GTAGAAGATT CCCAAGTTCC
  Y
  GGAGCAGAAC ATTTCAGCCG CTTTCAATGT CTCCCAGGTT CCTCCCCACC CAGCTCCGGG
  GGCCCACATT TGGATCCTGG CCAAGAGAGG CAGCAGCCAG GACCCCCCTA AATCCGTGCT
  TCCCTCCCAG TGTCCCGCCC CCTTCCTCTC TCCCCACCAC CTCCCTTCCA GACGCCGCAC
  TCAAAGCCCT CCAGAGCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ
ss50679593	NES13609747	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ
rs36433288					SNP	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50679593	NES13609747	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17813674 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10665	CpG island 10665	40 bp distal
Cpgi10666	CpG island 10666	183 bp proximal
Pcsk5	proprotein convertase subtilisin/kexin type 5	within coordinates
Rr544885	regulatory region 544885	within coordinates
Rr544886	regulatory region 544886	1266 bp proximal
Rr544887	regulatory region 544887	1312 bp proximal
Tssr158513	transcription start site region 158513	1310 bp downstream