rs36433319 SNP Detail

Summary

• ID
  rs36433319
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86585824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGAGGGC GATTTATCCT
  GTGGCCAAGC AGCCCTATAG CACAGAGCAG AGCTAACTGG CCAGCAGTAG CCAAACCTTG
  AGCCCACTTG GAACACAAAG CCCTCCACTC CTGCACTTTG ATTGGAATCC AAATTAGACT
  CCTTGATGGC TTTCTCCAGG GTATGGAGAC ATCTGTGTTC TACTCAAACA TCTGGTAGAG
  Y
  TCTTGGTTTC AGCCTCTAAA GTGTCTTCTG ACACACACAC ACACACACAC ACACACACAC
  ACGTATACAC ACATACATAC CATGTGCATT GTAACCTCCC ACAGACACAC ACACACACAG
  AGGTATGGGC AAATATAAGC ACACATAGGA TGATACACAG TCTATAAGGA GTTAGTACAT
  TTATTTATTG TGTGTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51751744	NES14803880	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36433319					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51751744	NES14803880	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86585824 () rs orientation: forward

Symbol	Name	Function Class
Gm67306	predicted gene, 67306	1140 bp upstream
Gm67317	predicted gene, 67317	163 bp downstream
Rr150658	regulatory region 150658	within coordinates
Rr368114	regulatory region 368114	1035 bp downstream
Tssr1919	transcription start site region 1919	1056 bp downstream
Tssr57493	transcription start site region 57493	996 bp downstream
Tssr57494	transcription start site region 57494	720 bp upstream
Tssr61819	transcription start site region 61819	1286 bp upstream
Tssr61820	transcription start site region 61820	1204 bp upstream
Tssr61821	transcription start site region 61821	1188 bp upstream
Tssr61822	transcription start site region 61822	1164 bp upstream
Tssr61823	transcription start site region 61823	1121 bp upstream
Tssr61824	transcription start site region 61824	473 bp downstream
Tssr61825	transcription start site region 61825	499 bp downstream