rs36434163 SNP Detail

Summary

• ID
  rs36434163
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:116729155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGCCAA GGGTTAGAAT
  GCTTGTATTG AACACTGGCT GAGCTGAGTT CATGTCTTGT ACAGCATCCC CTGACACCTC
  AAATCCACCA CTGCTTTGCT CCCCTGACCT ATGCACTTGG CGATAGCTCG AAAAGTTTTC
  AGTCAAGTAC GTACCCCGAG CCACACCGCC CACCCTAAGA AAGCAAGGGG GTTTGCATAG
  R
  AGGTGCGGAG TCTGTAGGAG TGTTGTTCCC CGTCAAAAAA TTCCTGTCCC TTTTCAACAG
  CCTCTCCCTT ACACAAGCGA TAATTTCTCA TGTTCCGGCG TGAGATACCG GGTACGACGG
  GCTTAGTCCA GACACCCTGT TCCAGTTGCC TGCGTCCACC CGTCAAGATT CTGGGGCACA
  GGCAAGAAAA GGGGGGGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51804023	NES14719118	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36434163					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51804023	NES14719118	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:116729155 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16401	CpG island 16401	within coordinates
Rr618510	regulatory region 618510	1817 bp distal
Rr618511	regulatory region 618511	707 bp distal
Rr618512	regulatory region 618512	711 bp proximal
Srrm4	serine/arginine repetitive matrix 4	Intron
Tssr52867	transcription start site region 52867	376 bp downstream
Tssr52868	transcription start site region 52868	686 bp downstream
Tssr52869	transcription start site region 52869	715 bp downstream
Tssr52870	transcription start site region 52870	762 bp downstream