rs36434814 SNP Detail

Summary

• ID
  rs36434814
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19279894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTCTCTCC TCATTTTGAG TACGGGACAG AATCGGGTTT
  TTAAGCCTCA CGCCGACTGG GACTTTAATT TTTGCTTTTT AAACTTTTAA TATTTTTTTT
  K
  AAATCGGTAA CCAACGTACG CAGGTAGAGG GTAGATATCT AGGGAGAGCG AGGGGAAAGG
  AGGGATGTAT GAACAAATCC AGTACCGTAT GGGAGAGAGC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50916960	NES13479768	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36434814					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50916960	NES13479768	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19279894 () rs orientation: forward

Symbol	Name	Function Class
Cpgi65	CpG island 65	11 bp proximal
Rr408237	regulatory region 408237	1780 bp distal
Rr408238	regulatory region 408238	700 bp distal
Rr408239	regulatory region 408239	within coordinates
Rr408240	regulatory region 408240	1894 bp proximal
Tfap2b	transcription factor AP-2 beta	within coordinates
Tssr6030	transcription start site region 6030	703 bp downstream
Tssr6031	transcription start site region 6031	676 bp downstream
Tssr6032	transcription start site region 6032	659 bp downstream
Tssr6033	transcription start site region 6033	637 bp downstream
Tssr6034	transcription start site region 6034	617 bp downstream
Tssr6035	transcription start site region 6035	581 bp downstream
Tssr6036	transcription start site region 6036	569 bp downstream
Tssr6037	transcription start site region 6037	544 bp downstream
Tssr6038	transcription start site region 6038	517 bp downstream
Tssr6039	transcription start site region 6039	493 bp downstream