rs36435231 SNP Detail

Summary

• ID
  rs36435231
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101077835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAAACAT TTATGTATGT
  TTTCTCATGA TGAAATAATT TCTAATTTTT CATTTATAAA ACAGTTTTAA AAAATTAAAA
  AAATCAAAGG GCACAAGGTC AGGGCCCTTA AGGGTGTAGT AAAGGGCTGG TTGTAGCAAT
  AAGTTACTGA TGGTAAGGAT TTGAGAACCT GACTTACAAG GAGCACAGCT GATCTACAGA
  M
  GCTAAACACA TTGTTTTTAG TGTGGCCTCC TCCTTACTGG GAAAGATCGA GTCTAAGCAC
  ACCTCATTAC AGACGCCAGC AGGCTCTATA ACCTGCGTTC TTTCCTCTGA AGACACAGGT
  AGTCCTGTGT GCACTGTGCA CACTGAGAGT CTCCAGGGCA ACAATCACAC AGGAGACCAA
  CTAACGCCTT CTGTTGTGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50785719	NES14211417	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	A	A	A	A	A		A	A	A	A		A
ss323148495	CHEV_9_101102966	CHEVERUD	SCREENING_POP	f	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36435231					SNP	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50785719	NES14211417	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101077835 () rs orientation: forward

Symbol	Name	Function Class
Gm67595	predicted gene, 67595	within coordinates
Ppp2r3a	protein phosphatase 2, regulatory subunit B'', alpha	within coordinates
Rr685595	regulatory region 685595	1422 bp distal
Rr685596	regulatory region 685596	9 bp proximal
Tssr91107	transcription start site region 91107	1682 bp upstream
Tssr91108	transcription start site region 91108	1639 bp upstream
Tssr91109	transcription start site region 91109	1556 bp upstream
Tssr91110	transcription start site region 91110	1548 bp upstream