rs36436068 SNP Detail

Summary

• ID
  rs36436068
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26383413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGGCAGG TAGGGCTACC
  CCAACCATTG GGCAATGTTG ATATCCTCAA GACTGGTCTT AAGTCTTAGA AAGTGCAAGT
  CTTGTGACTC TCCTTATAAG TGATTGAAAC ATAACTAAGA GATTATAATT TAATAGACTG
  AAAATGGTCA TCAAATGTCA CATAAGGAAG ACAGACCATG GCAAAATACA TTAGATTCTA
  Y
  TGTCAATCTG CTGAAATTTC TGGTCTTACT GTTAATTCCA GCTGTGCTTT GCTTTATAAA
  AACTACCTTC ACATAGGTAA TTTATGAAGT AACTCTTCAG TAGGGGCAGG ATCTTCTAGA
  GACATCCATG ACTAAGCTTT TCTAAAAATG TTAAAAATTG ATTTAACACT TGGAAACTCA
  GAGAAAGGTA TACCAATTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51444688	NES14435716	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36436068					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51444688	NES14435716	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26383413 () rs orientation: forward

Symbol	Name	Function Class
A830092H15Rik	RIKEN cDNA A830092H15 gene	1886 bp upstream
Nlgn1	neuroligin 1	Intron
Rr574316	regulatory region 574316	1464 bp proximal
Rr574317	regulatory region 574317	1965 bp proximal
Tssr32829	transcription start site region 32829	1773 bp downstream