rs36436533 SNP Detail

Summary

• ID
  rs36436533
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:31467088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTACTAAG AAGGGCAAAG
  GTCAGCTATA GACAACTTGA ACCTTTGTAG ACCTACCTAG AAAGGACCAG AGAAACCTCA
  TTATACAATG TCCCCAGGCC TTCTAAAACA GGGTCTCATA TGACCCAGTT GTCCCCAAAC
  TAGCTATATA GCTGAGGGTG ACTTTGAATA CAAGAGCCCC CTGCCTCCAC ATCTCAAGTG
  Y
  TGCAACTGAA GGGATGAAGC AGTAGACATG GCTATTAACT AGACTTTATC AACATTTGTT
  CCTCTTCTCC CAGTAGGCGG GCTGCAGTTT CAAATCCCCA TTTCTTTTGG CTTATAAGTT
  CCTTAAAAAT TTGTTAATGT TTCCTAAAAA CATTGTATTA GCTAGAATTC AAAGCTACTT
  CTTTAATAAT TACTCATTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51630466	NES14594920	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	C	T	T	C	T	T	T	T	T
ss147445823	ENSMUSSNP6627288	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36436533					SNP	C	C	T	T	T	C	T	C	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51630466	NES14594920	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:31467088 () rs orientation: forward

Symbol	Name	Function Class
Marchf6	membrane associated ring-CH-type finger 6	within coordinates
Tssr133930	transcription start site region 133930	965 bp downstream
Tssr133931	transcription start site region 133931	996 bp downstream
Tssr133932	transcription start site region 133932	1029 bp downstream