rs36438251 SNP Detail

Summary

• ID
  rs36438251
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:68469552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCAACAA ACATGAGCGT
  ACAGAGATCC TGGATAGCCA AAGCAATCTT GAGGAAAAAA AAAAAAACCA ACCCACACCC
  CCCAAACCAA CCAAACAAAC GATTCTGGAG GTATATGACC ATGCGTGTTT TAAAGCTGAA
  ATCTTGAAGC GTCTATAGCA TCTTGAAGGA AGGAACCATT CCTGGAGCAG GGTTCCTCAG
  S
  TGGGCTGCCA GCCTTCAAAT CCTATGCTTC CCAAAGTTAG AAACTTGATC TTGCTGTATT
  CCCTCCTCCT CCCCTCCCCT CCCCCTCTTA CCCCTCTTCC CCTCCTCCTC TCCCCTCTCT
  TCCCTCTCCC TCACCCCACC CTCTCTCTCA TCCGGGAATA ACAAAAGCAG TCACTTGCTG
  TAGTTAAAAA AAAATTAAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50460660	NES13443594	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36438251					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50460660	NES13443594	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:68469552 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10187	CpG island 10187	947 bp proximal
Mc5r	melanocortin 5 receptor	1023 bp upstream
Rr393851	regulatory region 393851	within coordinates
Tssr151786	transcription start site region 151786	1023 bp upstream
Tssr151787	transcription start site region 151787	1064 bp upstream