rs36438737 SNP Detail

Summary

• ID
  rs36438737
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149150672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTTAAACA ATTGCACCTA CACCGTTAAG TAACAAAAGC
  CAGAGACACC TGGAATCACA GCATTTGCGC CCTGTGCCAG CAACAATGTA ACGCATTCCA
  R
  TGACATTTGA CAATGAGCAG ACAGAAGAGG CATTACACGC GTCTTTAGAA GAATCAGGCT
  TCCTACCTTC AAGAGACAGA TGGAGGTAAG TTCCTTTATA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51052122	NES13892919	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36438737					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052122	NES13892919	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149150672 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	within coordinates
Gm30382	predicted gene, 30382	within coordinates
Rr398127	regulatory region 398127	488 bp upstream
Rr587324	regulatory region 587324	within coordinates
Rr587325	regulatory region 587325	147 bp proximal
Tssr36100	transcription start site region 36100	151 bp downstream
Tssr36101	transcription start site region 36101	218 bp downstream
Tssr36102	transcription start site region 36102	232 bp downstream
Tssr36103	transcription start site region 36103	316 bp downstream
Tssr36104	transcription start site region 36104	341 bp downstream
Tssr36105	transcription start site region 36105	418 bp downstream